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Mokita
Mokita
Last Activity: Sep 8 '08, 09:08 AM
Joined: Mar 5 '07
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  • Mokita
    started a topic Statistics libraries in C/C++
    in C

    Statistics libraries in C/C++

    Hello,

    I am trying to find libraries in C/C++ that can perform statistical analysis, like normalization of data or differential expression.

    I was looking for commercial and open source libraries... Can anyone suggest any?

    Thank you in advance,

    Mokita
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  • Mokita
    replied to Set class (order)
    in Java
    Thank you very much for the hint.

    Mokita...
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    Leave a comment:


  • Mokita
    started a topic Set class (order)
    in Java

    Set class (order)

    Hello,

    I am using Set class to remove duplicates from an array. The order in the array is important for my work. After removing the duplicates i create another array containing the elements of the Set, but I realize that the order is really different from the first array. Does anyone know how can I have the order of the Set it was inserted first?

    The code I am using:
    // my is the array containing the information,...
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  • Hello

    I want to thank you for your help, it is working. I also want to ask you a quick question.
    How can i change group 1 ([A-Z]\\d+) to catch: P00DF3 or 1234653 or Q5647GJD or A4658DF
    It is not catching the ones with letters in the midle.

    Thank you again,

    Mokita
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  • I am trying to do a workflow with taverna, which has a beanshell, where i can write a script in it.
    In my workflow i will have the output of a blast search, GI number, which are the P23234 or Q12344 or A12443 or only numbers and also a E-value, which is the EXP vaule is: e-10.
    From that output i want to extract the GI numbers which have an e-value<= 0.02. The way i thought i could extract was with regular expressions in java, but...
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  • My line 16 is:
    mEvalue = pEvalue.matcher (sEvalue);

    Mokita
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  • Extracting information from String (regex, Beanshell)

    Hello,

    I am working with Taverna to build a workflow. Taverna has a beanshell where I can program in java. I am having some problems in writing a script. I want to extract information from a string, separated by newline. For this i am using regex.

    The String is given:

    P48534
    EXP value is: e-10
    Q0543
    EXP value is: 4e-07


    My script look like this in Beanshell:

    ...
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    Last edited by prometheuzz; Aug 6 '07, 03:30 PM. Reason: Wrapped some code-tags around it.

  • Mokita
    replied to Delete duplicates array (String)
    in Java
    Thank you very much, it was very helpful.

    Mokita...
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  • Mokita
    started a topic Delete duplicates array (String)
    in Java

    Delete duplicates array (String)

    Hello,


    I am working with Taverna to build a workflow. Taverna has a beanshell where I can program in java. I am having some problems in writing a script, where I want to eliminate the duplicates in an array (String).


    for (int k=0; k<myLength; k++){
    boolean isthere=false;
    for (int l=0; l<sizeres; l++){
    if (res[l].equals(my[k])){
    isthere=true;
    break;...
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  • Mokita
    started a topic Taverna, workflow

    Taverna, workflow

    Hello,

    I do not know if someone has already worked with taverna, a software which helps developing workflows. I think it is a good tool and very helpful but i am only starting. Does someone know about it?

    Mariana
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  • Mokita
    started a topic Converting PDF files to XML (Urgent)
    in Perl

    Converting PDF files to XML (Urgent)

    Hi

    I am trying to find a perl module that could translate a file in PDF format into XML format.

    If someone could help..

    Thank you,

    Mokita
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