I currently have a list of genes in a file. Each line has a chromosome with it's information. Such an entry appears as:
NM_198212 chr7 + **115926679** **115935830** 115927071 11593344 2 *115926679*,'11 5933260', *115927221*,'11 5935830',
The sequence for the chromosome starts at base **115926679** and continues up to(but not including) base **115935830**
If we want the spliced sequence, we use...
pcamps
Last Activity: Apr 22 '12, 06:52 PM
Joined: Apr 21 '12
Location:
-
Parsing a file, and matching numbers of a sequence (python)
-
Matching parts of lines in a file (python)
I currently have a list of genes in a file. Each line has a chromosome with it's information. Such an entry appears as:
NM_198212 chr7 + 115926679 115935830 115927071 11593344 2 115926679,'115933260', 115927221,'115935830',
The sequence for the chromosome starts at base 115926679 and continues up to(but not including) base 115935830
If we want the spliced sequence, we use the exons.The first extends from 11... -
Easy Python Function Question
I need to create a program called extractGenes.py
The command line parameters need to take 2 OR 3 parameters
1. -s: this is an optional parameter, or switch, indicating that the user wwants the spliced gene sequence(intron s removed). The user does not have to provide this (meaning he wants the entire gene sequence), but it he does provide it then it must be the first parameter
2. input file (with the genes)...
No activity results to display