AFAIK, you can install and use NSE for free on your DB2 Express-C 9.1.x; don't know about commercial versions.
hth
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Use the CLP (command line processor) to connect to the DB2 system, catalog the database (if not already done) and the drop it; then you should be done.
It seems that dropping the database from the command-center (gui tools) does not delete it from the disk while doing it from clp or using the command-line tools is okay.
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