I am not sure if anyone on this blog is familiar with novosnp but any help would be appreciated.
Starting a new project requires opening a ref sequence and trace files. As per instructions on the ‘project creation’ help section (attached below)...
- I added a ref seq in FASTA – this shows a directory in the top left of novosnp window. If I click this directory it says no trace selected…
- The BLAST gives several trace files in .fasta format. I made a new directory for these runs and tried to open this directory in ‘add runs’. There is no output and when I click check alignment it says 'no ref seq or run selected'.
The instructions state 'once these files are added to the SQLite database, the program handles the steps automatically'. How do i make a database? Or does the program do it on its own when i open the ref seq and trace files?
Thanks :)
Lesley
Starting a new project requires opening a ref sequence and trace files. As per instructions on the ‘project creation’ help section (attached below)...
- I added a ref seq in FASTA – this shows a directory in the top left of novosnp window. If I click this directory it says no trace selected…
- The BLAST gives several trace files in .fasta format. I made a new directory for these runs and tried to open this directory in ‘add runs’. There is no output and when I click check alignment it says 'no ref seq or run selected'.
The instructions state 'once these files are added to the SQLite database, the program handles the steps automatically'. How do i make a database? Or does the program do it on its own when i open the ref seq and trace files?
Thanks :)
Lesley
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