similarity search in a SQLDB

[RodrigoBaptista]

I have a SQLDataBank and I want to compare some new datasets with my dataset that I already have on my db.. for this I want to make a positive similarity search to look for a best hit. I've tried blastn for DNA sequences, but I'm looking for a script to use with DNA sequences and band pattern numbers (amplicon weights). Some one knows wich is the best script to use? Thank you

[numberwhun]

Since you are obviously working with BioPerl, you may want to look through the list of modules and see if there is anything that you can use.

Regards,

Jeff