### Chip Seq Pre-Processing Paramaeters File

### Format: Tab-delimited. Pairs of name-value pairs.

GEO_PATH	/root/downloads/SequenceCentric/ChIPSeq/Processing/GEO_trial/
ENCODE_PATH	/root/downloads/SequenceCentric/ChIPSeq/Processing/ENCODE_trial/
STUDY_PARAM_DIR	ddd
SOFT_FILE_BASE	ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SOFT/by_series/GEO_ID/GEO_ID_family.soft.gz
RAW_FILE_BASE	ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GEO_ID/GEO_ID_RAW.tar
ENCODE_FILE_BASE	http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeENCODE_INSTITUTEChipSeq/          
UPDATED_GENOMES	hg18|mm9|ce6|dm3|yeast|
SAMPLE_FORMATS	eland|.bed|solexa|
SAMPLEFILE_PREFIX	GSM
MAX_READ_LENGTH	25
PROCESS_STEP_SEQ_FILE	/root/downloads/SequenceCentric/ChIPSeq/code/pipeline/processStepSequence.txt